
A bearded Snake returns to action.
Two years after Shadow Moses, we once again join Solid Snake, this time on the George Washington Bridge in New York City. He leaps off the side and onto an oil tanker, where he uses his codec to call Otacon. Apparently a new type of Metal Gear is on board the tanker, and Snake’s mission is to get photographic evidence of it with a digital camera. Otacon reveals shortly after Snake’s infiltration of the Tanker that the intel of this new Metal Gear was an anonymous tip from someone calling themselves E.E. That’s what Otacon called her stepsister, and so he took the info.
Shortly after leaping onto the ship, Russian soldiers invade the ship, killing the US Seals aboard. Snake believes these invaders to be Spetsnaz Special Forces hijacking the tanker.
Snake proceeds sneaking through the tanker. On the ship’s bridge, he encounters Olga, the daughter of the man leading the Russian insurrection of the ship, Gurlukovich. The two discuss living on the battlefield shortly before they fight. Snake tranquilizes Olga with his Hush Puppy pistol and moves toward the ship’s holds, where the new Metal Gear is supposedly housed.
After a battle through the holds, Snake sneaks past rooms full of Marines being debriefed on RAY, the amphibious Metal Gear successor to REX from Shadow Moses. Meanwhile, Shalashaska – also known as Revolver Ocelot – breaks his supposed allegiance to the Russians and makes his way to the holding room as well.
Snake takes photos of Metal Gear RAY and sends them to Otacon. Then, Ocelot breaks in, taking the Marines by surprise. The US Marine CO, Commander Dolph, tells Ocelot that he, ‘will never defeat the la-li-lu-le-lo.’ Laughing, Ocelot storms the room, killing Gurlukovich and Dolph, and hijacking RAY. During his escape, Ocelot becomes taken over by Liquid Snake, who’s arm had been transfused to Ocelot’s body some time between Metal Gear Solid 1 and 2.
Liquid talks with Snake about the past before completing the hijacking of RAY, discharging the new Metal Gear into the Hudson River. The last we see of Snake, he is being pulled underwater by the sinking ship’s undertow.

Raiden, the new protagonist for Metal Gear Solid 2.
Coming up from a fade to black, we hear Colonel Roy Campbell asking Snake if he remembers the sinking of the tanker two years ago. The crashed ship spilled oil all over the Hudson, prompting construction of the Big Shell offshore oil cleanup facility. A government-sponsored tour of the Big Shell for several high-up employees in the US government – including James Johnson, the President – was overtaken by Dead Cell, a rogue group of super soldiers. They demand thirty billion dollars, or else they will launch a nuclear strike and send concentrated toxins filtered by the Big Shell back into the water.
Snake, wearing a Skull Suit and mask, infiltrates the Big Shell through a break in a fence surrounding the facility underwater. As he rides an elevator up to the main facility, he removes his mask, revealing not to be the Snake from previous Metal Gear games. Behind the mask was a man named Jack – code-named Raiden – a rookie member of FOXHOUND whose only previous combat experience was in VR Simulations.
Raiden entered the Big Shell in tandem with Seal Team 10, although they are quickly slaughtered during their entry. Soon, Raiden is the only hope of diffusing the hostage situation brought up by the members of Dead Cell.
He soon encounters many Dead Cell members – Fatman, a bomb expert; Fortune, a melancholy soldier who cannot be injured or hit by any weapons; and Vamp, a blade specialist who is killed and resurrected several times over, giving the impression that he is immortal. Pinned in the corner by Vamp, Raiden is saved by a soldier named Iroquois Pliskin, who bears a striking resemblance to Solid Snake. Raiden asks about Seal Team 10 and Iroquois has no idea what he’s taking about. All the information Raiden is receiving from the Colonel and his girlfriend, Rosemary, the mission data analyst, seems to be foreign to Iroquois.
The two team up with Peter Stillman, a bomb disposal expert, to diffuse a number of C4 bombs rigged to blow to Big Shell facility. After freezing them all with coolant, Stillman realizes that these were dummy bombs that, when deactivated, would start a timer on a real bomb. After finding the real bombs, Stillman is caught in a microwave trigger and is killed. Raiden successfully freezes his with coolant. He then takes on the mastermind behind the bombs, Fatman. Again, he seems to have no knowledge of Dead Cell or the Seal Team that Raiden was told about.

The unkillable Vamp makes several appearances.
Shortly after defeating Fatman, Raiden is confronted by a ninja that looks exactly like Gray Fox from Shadow Moses and speaks in similar mannerisms. The ninja in turn directs Raiden’s attention to a man named Ames, who may know the location of the President.
Raiden disguises himself as an enemy soldier and talks to Ames, shortly before being confronted by Ocelot. Before Raiden comes to harm, though, the ninja steps in and saves him. Raiden escapes and heads for Shell Two, where the President is being held. Destroyed by Stillman’s failed bomb defusal, Raiden must navigate the destroyed Shell.
On the way he’s confronted by Solidus Snake, a third clone of Big Boss (along with Solid and Liquid) who is said to be the most perfect clone of the legendary soldier. Raiden must fight him and a Harrier Jet before he can find the President. It’s here, in Solidus’ presence, that Iroquois reveals himself to be none other than Solid Snake.
After meeting the President, he says that he authorized the nuclear launch for Dead Cell because he was sick of being a figurehead. When asked why, the President reveals a secret society known as The Patriots. Run by a group of twelve called The Wiseman’s Committee, The Patriots control everything crucial in the world; the global and war economies, even who gets elected President. In short, President Johnson has no control over the shaping of his country. Raiden, bewildered, refuses to believe him.
The President also lets slip that a new type of Metal Gear is being developed at the Big Shell; in fact, the sinking of the tanker two years ago was staged so that the Big Shell could be built to develop it. Raiden asks where it is and President tells him he’s standing in it; the entirety of Big Shell is the new Metal Gear, called Arsenal Gear.
The President is then shot and killed by Ocelot, as the nuclear launch is locked in and they no longer have use for him. Raiden soon after learns of GW, a massive AI program developed by The Patriots. GW has the ability to filter information as it is introduced and stored digitally. In the Digital Age, The Patriots feel there is too much information, too many opinions. This information is screened and reshaped as they see fit through GW.
Raiden seeks out a programmer for the Big Shell, Emma Emmerich, Otacon’s sister. She has programmed a worm cluster that can destroy GW. However, they need to get back to Shell One to upload it into Arsenal Gear, thus rendering the new Metal Gear useless without GW as its support system. With the bridge destroyed from the Harrier assault, Raiden and Snake must play sniper for Emma as she tiptoes across an oil fence on the outskirts of the Big Shell.
Vamp appears and takes Emma hostageat knifepoint. Raiden must carefully aim a sniper shot past Emma and hit Vamp, sending him into the water. Emma, however, catches his blade in her stomach and is bleeding out. Snake and Emma rush to her on the oil fence and carry her back to Shell One, where Otacon is waiting to upload GW. Otacon and Emma reconcile a family issue; when Emma was a little girl, she almost drowned in a swimming pool. Otacon was always looking out for her, but on this occasion, he was not; he was upstairs, where his stepmother was seducing him. His father, upon learning this, committed suicide.
As they reconcile their past, Emma’s virus uploads into GW. Around the time the upload completes, Emma passes away. Otacon, devastated, drops to the floor and begins to cry. He sees Emma’s pet parrot, whom she brought to the Big Shell to keep her company while she worked. The Parrot says, Hal, I miss you, suggesting Emma talked about her brother a lot to her parrot. Snake pulls Otacon together and tells him that the mission needs to be completed. Otacon takes the surviving hostages from the Dead Cell incident and loads them into a chopper to get them to New York City. Everyone else has gone to a sub-basement, where an army of Metal Gear RAY units are housed to assist Arsenal Gear, which is too big to fully defend itself.
Raiden and Snake head toward the elevator when Snake stops. The ninja again appears, revealing herself to be Olga, whom Snake battled on the tanker two years ago. Before Raiden can process the situation, Olga knocks him out.
He awakes naked on a torture chamber, with Olga looming in front of him. She explains to Raiden that she is under orders from The Patriots to assist him in his mission on the Big Shell. The child she was conceiving at the time of the tanker mission was born in a Patriot-controlled hospital, and her child was promptly taken from her; she never got the chance to hold it. Now, her child’s vital signs are tied to Raiden’s nanomachines; if he dies, so will Olga’s baby. After being tortured by Solidus, Olga releases Raiden’s constraints.
Running through Arsenal Gear completely naked, Raiden receives extremely strange Codec messages from the Colonel, regarding past lives, worms committing suicide, alien abductions, and out-and-out gibberish. Raiden continues through Arsenal looking for Snake, who he believes has his gear.
In Arsenal Gear’s Ascending Colon, Raiden finds Snake, who delivers his sneaking suit and gear. He also gives Raiden a present from Olga; a sword. Together, Snake and Raiden fight through a score of super soldiers. As they fight, Raiden receives a number of misspelled Game Over screens, reading Fission Mailed. Otacon calls to tell Raiden that he thinks he knows why the Colonel has been acting so strange. It’s not actually the Colonel at all, but rather, the Patriots’ GW AI system generating speech and directives in the Colonel’s voice. Rosemary, too, is simply part of the AI system. Since Raiden and Snake seem to be inside GW, the world around them is coming apart fast. Raiden wonders if Rose had ever existed at all.
With no way to go but forward, the two continue into a room where Fortune awaits. The daughter of Commander Dolph, the CO killed on the tanker, Fortune mistakenly believes that Snake was responsible for his death. Raiden goes deeper into Arsenal while Snake fights Fortune.
Raiden is confronted by Solidus, who explains that – when he was a child – Raiden was under his control in a rogue army’s Small Boy Unit, where child soldiers fought. Raiden was fed gunpowder and trained to mark and remember each kill he made, and to compete with his fellow child soldiers. With these painful memories brought back to the surface, Solidus unleashes a dozen Metal Gear RAY units on Raiden, who must fight through them to proceed.
Afterward, Snake, Raiden, Solidus, Ocelot, and the remaining Dead Cell members are all aboard the top of Arsenal Gear as it heads on a crash course with Manhattan. The Patriots’ will is to unleash a nuclear blast in the atmosphere above New York, shorting its electric devices and causing a sort of reset in digital information, after which point they can fully control the flow of that information.

Many plot twists make this the most confusing game in the Metal Gear timeline.
Ocelot reveals that the entire Big Shell mission was set up by the Patriots to mimic the Shadow Moses incident four years ago. The set up was entitled S3 – Solid Snake Simulation. They wanted to see if anybody could be shaped into an exemplary soldier on par with Snake. Raiden was chosen because his awful past with Solidus was comparable to Snake’s past with Big Boss.
Ocelot further delves into the Patriots’ powers over humanity. Most of the people at Big Shell had scripts written for them, and the Patriots had manipulated their nanomachines to perpetuate it. Every event and line had been produced with the intent of pushing Raiden to his limits, to see if a virtual circumstance could truly make him a soldier equal with Solid Snake.
Infuriated, Fortune shoots at Ocelot but, strangely, cannot hit him, much like she could not be hit throughout the Big Shell incident. Ocelot, pulling a revolver, shoots Fortune and hits, sending a very clear message that the Patriots were awarding her special talents.
Arsenal crashes into New York, sending Raiden and Solidus toppling onto Federal Hall. The Colonel calls. He explains that S3 actually stands for Selection for Societal Sanity. They created the Big Shell exercise to see if they really could control the flow of information, and to them it was a success, ready to implement in their soon to be ‘liberated’ Manhattan.
Raiden fights and defeats Solidus with the blade given to him by Olga, sending him to his death at the steps of Federal Hall. With the simulation over, Raiden catches up with Snake in New York City, where they discuss the importance of passing down information verbally, through actions, and not always through digital means.
After the credits, Snake and Otacon have a phone conversation. He tells Snake that he found a list containing the files of the Patriots’ Wiseman’s Committee inside GW, and that they’re all dead. Snake asks when they died, and he says it was about a hundred years ago.
This story was contained in Metal Gear Solid 2: Sons of Liberty, released in 2001 on the Playstation 2.