that the Evil Corporation was researching Matrix-esque human batteries. It seemed like the black masses were some sort of mind-controlling parasite they discovered that let them breed/create vegetative humans for this purpose - you follow their early research through the first half of the game, from animal testing to humans controlled with a device to "zombies" that just kind of instinctively act as one unit. At the climax, you form up with your buddies and bust out of the facility's pilot reactor (possibly during its first live test, given the crowd?), trash the building, and roll out into the world. I don't think the red shirt boy is meant to have any characterization other than "curious kid who wants to explore that crazy complex in the woods."
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