I've already played Acid and Rising, so... yes? Heck, I haven't played it myself, but I heard good things about Ghost Babel, too.
Kojima brings a lot to Metal Gear, some of it good, some of bad. So when he's not around you lose some stuff, but maybe that's not a bad thing. And who knows what you might gain in its place? And keep in mind, It's not like he wrote a novel; a vast multitude of people made those games happen. So if someone comes along and does something interesting with that setting and those characters, I'm down.