Well, not sure how many people are still going to need more info about this since the last guy that posted was a week ago, and before that MONTHS ago, but if you end up here from a Google search or whatever, maybe this will help you:
I had this happen but there was no way to fire at the guy (he was waaaaaaaaaay far off and hidden.) So I ended up going into the nearby LIMB and leaving again to cause him to respawn. The first time I did this he still spawned badly, but was better. So I tried one more time (this time I also rebooted the game, so you may want to also try that, but honestly I don't know if that was what did it) and it worked! He finally spawned correctly inside the room.
TL;DR - Go in and out of LIMB until the bastard spawns correctly in the room. Worked for me! I also quit completely out of the game once, but I'm not sure if that was needed.
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