If you get Makoto's bad ending, you're basically telling her sister that she was drugged and raped repeatedly and her reaction is just, "eh, whatever"? I mean, cmon! I know Sae and Makoto had some relationship issues, but that's just...bad

Not really since you are simply misremembering what actually happened due to being drugged up. Sae isn't reacting because she knows that isn't what actually happened. If it had then you never would have made it far enough to infiltrate Sae's palace and get arrested in the first place.

@starvinggamer: good point! Although, wouldn't Sae think that you're supremely fucked up for making that up?

@sethmode: I mean that's exactly what she thinks. She thinks you're too fucked up on the drugs to speak coherently and gives up on questioning you.

@starvinggamer: I meant more fucked up in the sense that only someone super twisted would come up with a horrible drugging and raping.

@sethmode: Nah, that's like... explicitly what Kaneshiro says he's gonna do to her, and a common enough crime that someone like Sae would have had repeat exposure to it happening IRL. Also she's not coming in to question a random kid, it's an alleged member and possibly leader of a world-known vigilante/criminal organization that advertises their exploits.