From what I can gather:
Space Station Thesus is put into orbit around a planet to mine for resources. It is supposed to be left on its own for seven years (although some characters imply that it has been decades in isolation). While there, they find evidence of alien life, but no aliens. However, they do notice electrical signals eminating from the rocks. They take some of the rocks back, including a very large rock termed the "head" (because it is shaped like the head).
The scientist study the rocks and come to the conclusion that the aliens have somehow used their technology to imprint their minds into the rocks and form a collective hive mind, a "great chain" of being. The substance from the rocks allows the creation of the "swapper" device, which allows cloning and the ability to move consciousness around. They test the swapper device on crewmembers, but they find that it produces adverse effects (memory loss, catatonia, etc) and so they ban testing of the swapper device on people. They instead decide to experiment with the device on the brains of terminally ill patients whose bodies are certain to die. They can donate their brains (themselves) to the project. Dennett and Chalmers were the two brains donated.
The watcher rocks taken aboard the space station notice, however, that they are not in contact with the other rocks in their "chain" and are wondering where they have gone. They try to reach out to the other members of their "chain". In the process, their psychic eminations slowly drive the crew crazy and start killing them. The watchers don't intend to do this - they see no problem in trying to "probe" the minds of others because they are used to a "hive mind". The watchers don't realize that they are killing the crew (who all die) - the crew try to eject the rocks back into space or return them to their planet, but they all die before they can.
Along comes "the scavenger", a woman who is exploring thesus to find riches. She finds the space station and she finds Dennett and Chalmers, the two brains left in the station in the only shielded area. By coming into the shielded area, she has condemned them to die as well. The ship she came in is fried, so she can't leave. She picks up the swapper device and the two brains ask her to experiment with it - it creates a clone of her, which freaks her out so she ejects it into space (your character is this clone). Dennett and Chalmers offer to help her escape, but she has to meld minds with them. She doesn't want to, but feeling that she has no choice, she does. Chalmers and Dennet and the Scavenger become one and seek to escape the station. They later require the help of the clone.
All the while, Dennet and Chalmers argue with each other internally within the original Scavenger. Dennett says that a "mind is a brain" (which is what you'd expect, given that the character was named after Daniel C. Dennett, the famous philosopher), whereas Chalmers (I don't know who that character is named after), is adamant that there is something "else". Dennett doesn't like the swapper technology, Chalmers does. Originally the plan is to escape, but the three-in-one person cannot decide and eventually injects herself (themselves?) into the watcher.
Your character makes contact with the rescue team and has a choice - to do what "you need to do to survive" and inject herself into the rescue team personnel - which is what Chalmers would have done, believing that she would not be "lost", or take Dennett's view that "we are our brain" and that by moving your consciousness into someone else's head, you will not be yourself any longer (and won't even know that you aren't yourself any more).
At least, that's what I got out of the story.
The only question I have - Why was the original clone (that became your character) able to have an independent will when none of the other clones could? Is it because you were separated from the original so that you were able to form your independent mind?
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