Here's my fun version of your problem.
I accepted the Atlas question in the beginning, repaired the ship, left my starter planet and flew to the nearest space station. I didn't realise the next step after leaving the starter planet is to follow a quest waypoint to a vendor who will teach you the hyperdrive blueprint. Instead of following that step, once I reached the space station, I redeemed the pre-order ship and because it has a hyperdrive already in it, the quest updated to the next step after getting the blueprint - learning to make the warp cells. I completed the rest of the tutorial quest, crafted the warp cells and went on my merry way. I didn't even realise I'd missed a step at the time.
About 10 hours later, I finally decided to upgrade my ship. I was getting sick of the low inventory space, and I'd jumped through about 7 systems at this point so the pirate ships were starting to carve me up if I got caught in a fight. I'd mostly been focusing on scanning/mining. It actually took me a while to find a ship I liked and could afford - most of the ones flying into the stations near me were between $1-5 million spacebux, which is crazy. When I found my dream machine, I moved all my resources over and started to see what upgrades I could install.
Hmm... That's weird. I don't have a hyperdrive component option in the crafting menu. A couple quick Google searches later, and I discover a bunch of other people having the same problem. Oh shit. Now I'm stuck in a system with 1 planet, and no warp drive. This is a problem.
Apparently after the first warp jump you perform, most people get offered a waypoint to visit an outpost and get the hyperdrive blueprint from an alien vendor if they haven't got it already. Guess I missed that prompt too. I'm told that colonial outposts and crashed ship locations on planets can have hyperdrives or their blueprints, but the planet in my system doesn't have any of those. I did just find a post on Reddit where someone claims you can use the beacons next to outposts that require a bypass chip to activate and scan for a colonial outpost, so I guess I'll try that next.
It's 2AM now, so I'm going to bed, and I'll deal with it tomorrow.
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