It seems clear to me that the dreamy sequences with the kid is the reapers trying to indoctrinate sheperd and the option of assimilating with reapers is exactly what the reapers want and the game repeatedly tells you that the reapers cant be controlled throughout the whole game. The prothean says that exact thing when describing a group of indoctrinated protheans who thought they could control the reapers. Mass effect 3 has the best ending ever and indoctrination will be confirmed in dlc for all the haters.
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